{"id":501,"date":"2025-11-23T18:16:40","date_gmt":"2025-11-23T18:16:40","guid":{"rendered":"https:\/\/research.iitgn.ac.in\/compbio\/?page_id=501"},"modified":"2026-03-11T18:34:03","modified_gmt":"2026-03-11T18:34:03","slug":"publications","status":"publish","type":"page","link":"https:\/\/research.iitgn.ac.in\/compbio\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n<div class=\"wp-block-uagb-container uagb-block-fd6a9064 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-uagb-tabs uagb-block-d4b99ff6 uagb-tabs__wrap uagb-tabs__hstyle1-desktop uagb-tabs__vstyle6-tablet uagb-tabs__stack1-mobile\" data-tab-active=\"0\"><ul class=\"uagb-tabs__panel uagb-tabs__align-left\" role=\"tablist\"><li class=\"uagb-tab uagb-tabs__active\" role=\"none\"><a href=\"#uagb-tabs__tab0\" class=\"uagb-tabs-list uagb-tabs__icon-position-left\" data-tab=\"0\" role=\"tab\"><div>Latest Publications<\/div><\/a><\/li><li class=\"uagb-tab \" role=\"none\"><a href=\"#uagb-tabs__tab1\" class=\"uagb-tabs-list uagb-tabs__icon-position-left\" data-tab=\"1\" role=\"tab\"><div>List of Publications<\/div><\/a><\/li><\/ul><div class=\"uagb-tabs__body-wrap\">\n<div class=\"wp-block-uagb-tabs-child uagb-tabs__body-container uagb-inner-tab-0\" aria-labelledby=\"uagb-tabs__tab0\">\n<div class=\"wp-block-jetpack-slideshow aligncenter\" data-autoplay=\"true\" data-delay=\"5\" data-effect=\"fade\" style=\"--aspect-ratio:calc(1024 \/ 694)\"><div class=\"wp-block-jetpack-slideshow_container swiper\"><ul class=\"wp-block-jetpack-slideshow_swiper-wrapper swiper-wrapper\"><li class=\"wp-block-jetpack-slideshow_slide swiper-slide\"><figure><img fetchpriority=\"high\" decoding=\"async\" width=\"1024\" height=\"694\" alt=\"\" class=\"wp-block-jetpack-slideshow_image wp-image-616\" data-id=\"616\" data-aspect-ratio=\"1024 \/ 694\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Karthik-Ashutosh-Sandhya-1024x694.jpg\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Karthik-Ashutosh-Sandhya-1024x694.jpg 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Karthik-Ashutosh-Sandhya-300x203.jpg 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Karthik-Ashutosh-Sandhya-768x521.jpg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Karthik-Ashutosh-Sandhya.jpg 1049w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-block-jetpack-slideshow_caption gallery-caption\">Karthik Sudarsanam, Ashutosh Srivastava, and Sandhya P. Tiwari (2025). Comparing PAS domain-coupled intrinsic dynamics in bHLH-PAS domain transcription factor complexes. Biophysical Journal, 125(2), 629\u2013640. https:\/\/doi.org\/10.1016\/j.bpj.2025.10.038<\/figcaption><\/figure><\/li><li class=\"wp-block-jetpack-slideshow_slide swiper-slide\"><figure><img decoding=\"async\" width=\"1024\" height=\"1024\" alt=\"\" class=\"wp-block-jetpack-slideshow_image wp-image-614\" data-id=\"614\" data-aspect-ratio=\"1024 \/ 1024\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-1024x1024.jpg\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-1024x1024.jpg 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-300x300.jpg 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-150x150.jpg 150w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-768x768.jpg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-1536x1536.jpg 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh.jpg 1653w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-block-jetpack-slideshow_caption gallery-caption\">Yashasvi Rao, Ashutosh Srivastava (2026), Unraveling circadian rhythms\u2014computational insights into molecular mechanisms. FEBS Letters. https:\/\/doi.org\/10.1002\/1873-3468.70264<\/figcaption><\/figure><\/li><li class=\"wp-block-jetpack-slideshow_slide swiper-slide\"><figure><img decoding=\"async\" width=\"1024\" height=\"796\" alt=\"\" class=\"wp-block-jetpack-slideshow_image wp-image-518\" data-id=\"518\" data-aspect-ratio=\"1024 \/ 796\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-1024x796.jpg\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-1024x796.jpg 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-300x233.jpg 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-768x597.jpg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-1536x1194.jpg 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-2048x1592.jpg 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-block-jetpack-slideshow_caption gallery-caption\">Shriyansh Srivastava, Vishnu A M, Rakesh Thakur and Ashutosh Srivastava (2025), REV-ERB\u03b2 Binding Pocket Dynamics With Implications for Rational Design of Small Molecule Modulators. Proteins. https:\/\/doi.org\/10.1002\/prot.26841<\/figcaption><\/figure><\/li><li class=\"wp-block-jetpack-slideshow_slide swiper-slide\"><figure><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"579\" alt=\"\" class=\"wp-block-jetpack-slideshow_image wp-image-519\" data-id=\"519\" data-aspect-ratio=\"1024 \/ 579\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S-1024x579.webp\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S-1024x579.webp 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S-300x169.webp 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S-768x434.webp 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S-1536x868.webp 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S.webp 2032w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-block-jetpack-slideshow_caption gallery-caption\">Shashank Kumar Singh, Ashutosh Srivastava (2024); Decoding the plant clock: a review of mathematical models for the circadian regulatory network. Plant Mol Biol , 114, 93 (2024). https:\/\/doi.org\/10.1007\/s11103-024-01493-2<\/figcaption><\/figure><\/li><\/ul><a class=\"wp-block-jetpack-slideshow_button-prev swiper-button-prev swiper-button-white\" role=\"button\"><\/a><a class=\"wp-block-jetpack-slideshow_button-next swiper-button-next swiper-button-white\" role=\"button\"><\/a><a aria-label=\"Pause Slideshow\" class=\"wp-block-jetpack-slideshow_button-pause\" role=\"button\"><\/a><div class=\"wp-block-jetpack-slideshow_pagination swiper-pagination swiper-pagination-white\"><\/div><\/div><\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-uagb-tabs-child uagb-tabs__body-container uagb-inner-tab-1\" aria-labelledby=\"uagb-tabs__tab1\">\n<ul class=\"wp-block-list\">\n<li><strong>Karthik Sudarsanam, Ashutosh Srivastava<\/strong>, and Sandhya P. Tiwari (2025). <a href=\"https:\/\/doi.org\/10.1016\/j.bpj.2025.10.038\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.1016\/j.bpj.2025.10.038\">Comparing PAS domain-coupled intrinsic dynamics in bHLH-PAS domain transcription factor complexes<\/a>. <em>Biophysical Journal<\/em>, <em>125<\/em>(2), 629\u2013640. <a href=\"https:\/\/doi.org\/10.1016\/j.bpj.2025.10.038\">https:\/\/doi.org\/10.1016\/j.bpj.2025.10.038<\/a><\/li>\n\n\n\n<li><strong>Yashasvi Rao, Ashutosh Srivastava<\/strong> (2026), <a href=\"https:\/\/doi.org\/10.1002\/1873-3468.70264\">Unraveling circadian rhythms\u2014computational insights into molecular mechanisms<\/a>. <strong>FEBS Letters<\/strong>. <a href=\"https:\/\/doi.org\/10.1002\/1873-3468.70264\">https:\/\/doi.org\/10.1002\/1873-3468.70264<\/a><\/li>\n\n\n\n<li>Vajpayee, K., <strong>Shriyansh Srivastava<\/strong>, Sharma, S., Gupta, S., <strong>Ashutosh Srivastava,<\/strong> Paida, V., Dash, H. R., Pappachan, A., Shukla, R. K., &amp; Sengupta, S. (2026). <a href=\"https:\/\/doi.org\/10.1016\/j.forsciint.2026.112825\">Elucidating the mechanism of fulvic acid-mediated PCR inhibition and its mitigation through nanoparticle-assisted amplification<\/a>. <em><strong>Forensic Science International<\/strong><\/em>, <em>380<\/em>, 112825. <a href=\"https:\/\/doi.org\/10.1016\/j.forsciint.2026.112825\">https:\/\/doi.org\/10.1016\/j.forsciint.2026.112825<\/a><\/li>\n\n\n\n<li>Vajpayee, K., <strong>Shriyansh Srivastava<\/strong>, Sharma, S. <em>et al.<\/em> <a href=\"https:\/\/doi.org\/10.1038\/s41598-026-35010-w\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.1038\/s41598-026-35010-w\">Mechanistic insights into melanin-induced PCR inhibition and its NanoPCR-based mitigation<\/a>. <strong><em>Scientific Rep<\/em>orts<\/strong> <strong>16<\/strong>, 5467 (2026). <a href=\"https:\/\/doi.org\/10.1038\/s41598-026-35010-w\">https:\/\/doi.org\/10.1038\/s41598-026-35010-w<\/a><\/li>\n\n\n\n<li><strong>Shriyansh Srivastava, Vishnu A M, Rakesh Thakur and Ashutosh Srivastava<\/strong> (2025), <a href=\"https:\/\/doi.org\/10.1002\/prot.26841.\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.1002\/prot.26841.\">REV-ERB\u03b2 Binding Pocket Dynamics With Implications for Rational Design of Small Molecule Modulators<\/a>, <strong>Proteins: Structure, Function, and Bioinformatics<\/strong> 93, no. 10 (2025): 1790\u20131804, <a href=\"https:\/\/doi.org\/10.1002\/prot.26841.\">https:\/\/doi.org\/10.1002\/prot.26841.<\/a><\/li>\n\n\n\n<li>Bhalla, H., <strong>Karthik<\/strong> <strong>Sudarsanam, Ashutosh Srivastava, <\/strong>Sankaranarayanan, S., <a href=\"https:\/\/doi.org\/10.1007\/s11103-024-01548-4\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.1007\/s11103-024-01548-4\">Structural insights into the recognition of RALF peptides by FERONIA receptor kinase during Brassicaceae pollination<\/a>. <strong><em>Plant Mol Biol<\/em> 115<\/strong>, 17 (2025). https:\/\/doi.org\/10.1007\/s11103-024-01548-4<\/li>\n\n\n\n<li><strong>Shashank Kumar Singh, Ashutosh Srivastava <\/strong>(2024); <a href=\"https:\/\/link.springer.com\/article\/10.1007\/s11103-024-01493-2\">Decoding the plant clock: a review of mathematical models for the circadian regulatory network<\/a>. <strong><em>Plant Mol Biol<\/em> , <\/strong>114, 93 (2024). <a href=\"https:\/\/doi.org\/10.1007\/s11103-024-01493-2\">https:\/\/doi.org\/10.1007\/s11103-024-01493-2<\/a><\/li>\n\n\n\n<li>Dhara, Palash, Niyati Shah, <strong>Vidya Sundaram<\/strong>, <strong>Ashutosh Srivastava<\/strong>, Alexander A. Solovev, Yongfeng Mei, Dmitry A. Gorin, and Krishna Kanti Dey (2024); <a href=\"https:\/\/doi.org\/10.1016\/j.isci.2024.109286\">Influence of Protein Nativity on the Stability of Bovine Serum Albumin Coated Microbubbles<\/a>. <em><strong>iScience<\/strong><\/em>, 109286.<\/li>\n\n\n\n<li>Gideon, D. A., Nirusimhan, V., E, J. C., <strong>Karthik Sudarsha<\/strong>, &amp; Manoj, K. M. (2022). <a href=\"https:\/\/doi.org\/10.1080\/07391102.2021.1925154\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.1080\/07391102.2021.1925154\">Mechanism of electron transfers mediated by cytochromes <em>c<\/em> and <em>b<\/em><sub>5<\/sub> in mitochondria and endoplasmic reticulum: classical and murburn perspectives<\/a>. <em><strong>Journal of Biomolecular Structure and Dynamics<\/strong><\/em>, <em>40<\/em>(19), 9235\u20139252. <a href=\"https:\/\/doi.org\/10.1080\/07391102.2021.1925154\">https:\/\/doi.org\/10.1080\/07391102.2021.1925154<\/a><\/li>\n\n\n\n<li><strong>Sayantoni Chaudhuri<\/strong> and <strong>Ashutosh Srivastava<\/strong> (2022); <a href=\"https:\/\/link.springer.com\/article\/10.1007\/s12038-022-00285-4\">Network approach to understand biological systems: From single to multilayer networks<\/a>. <strong>Journal of Biosciences<\/strong>, 47, 4, 1-18<\/li>\n\n\n\n<li>Albert M Schulte, Du\u0161an Kolarski, <strong>Vidya Sundaram, Ashutosh Srivastava<\/strong>, Florence Tama, Ben L Feringa, Wiktor Szymanski (2022); <a href=\"https:\/\/www.mdpi.com\/1422-0067\/23\/10\/5326\" target=\"_blank\" rel=\"noreferrer noopener\">Light-Control over Casein Kinase 1\u03b4 Activity with Photopharmacology: A Clear Case for Arylazopyrazole-Based Inhibitors.<\/a> <strong>International Journal of Molecular Sciences<\/strong>, 23, 10, 5326<\/li>\n\n\n\n<li>RP Vivek-Ananth, Ajaya Kumar Sahoo, <strong>Ashutosh Srivastava*<\/strong>, Areejit Samal* (2022); <a href=\"https:\/\/pubs.rsc.org\/en\/content\/articlehtml\/2022\/ra\/d1ra06702h\" target=\"_blank\" rel=\"noreferrer noopener\">Virtual screening of phytochemicals from Indian medicinal plants against the endonuclease domain of SFTS virus L polymerase<\/a>. <strong>RSC Advances<\/strong>, 12, 10, 6234-6247<\/li>\n\n\n\n<li><strong>Shriyansh Srivastava,<\/strong> Rajopadhye, R., Dey, M., &amp; Singh, R. K. (2021). <a href=\"https:\/\/doi.org\/10.1080\/14728222.2021.1924151\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.1080\/14728222.2021.1924151\">Inhibition of MK2 kinase as a potential therapeutic target to control neuroinflammation in Alzheimer\u2019s disease.<\/a> <em><strong>Expert Opinion on Therapeutic Targets<\/strong><\/em>, <em>25<\/em>(4), 243\u2013247. <a href=\"https:\/\/doi.org\/10.1080\/14728222.2021.1924151\">https:\/\/doi.org\/10.1080\/14728222.2021.1924151<\/a><\/li>\n\n\n\n<li>Simon Miller<sup>#<\/sup><strong><u>, Ashutosh Srivastava<\/u><\/strong><sup>#<\/sup>, Yoshiko Nagai, Yoshiki Aikawa, Florence Tama, and Tsuyoshi Hirota (2021); <a href=\"https:\/\/www.pnas.org\/doi\/10.1073\/pnas.2026191118\" target=\"_blank\" rel=\"noreferrer noopener\">Structural differences in the FAD-binding pockets and lid loops of mammalian CRY1 and CRY2 for isoform-selective regulation<\/a>. <strong>PNAS<\/strong>, 118, 26, e2026191118 <strong>(<sup>#<\/sup>Equal Contribution)<\/strong><\/li>\n\n\n\n<li>Du\u0161an Kolarski, Carla Mir\u00f3 Vinyals, Akiko Sugiyama, Kenichiro Itami, <strong><u>Ashutosh Srivastava<\/u><\/strong>, Florence Tama, Wiktor Szymanski, Tsuyoshi Hirota, Ben L. Feringa (2021), <a href=\"https:\/\/www.nature.com\/articles\/s41467-021-23301-x\" target=\"_blank\" rel=\"noreferrer noopener\">Reversible Modulation of Circadian Time with Chronophotopharmacology,<\/a> <strong>Nature Communications<\/strong>, 12, 3164.<\/li>\n\n\n\n<li>Dusan. Kolarski, Simon Miller, Tsuyoshi. Oshima, Yoshiko. Nagai, Yugo. Aoki, Piermichele Kobauri, <strong><u>Ashutosh Srivastava<\/u><\/strong> et al., (2021), <a href=\"https:\/\/pubs.acs.org\/doi\/abs\/10.1021\/jacs.0c12280\" target=\"_blank\" rel=\"noreferrer noopener\">Photopharmacological Manipulation of Mammalian CRY1 for Regulation of the Circadian Clock<\/a>, <strong>Journal of the American Chemical Society<\/strong>, 143, 4, 2078\u20132087.<\/li>\n\n\n\n<li><strong><u>Ashutosh Srivastava*<\/u><\/strong>, Varun Birari, Somdatta Sinha*, (2020) <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0006349520303118\" target=\"_blank\" rel=\"noreferrer noopener\">Small conformational changes underlie evolution of resistance to NNRTI in HIV Reverse Transcriptase<\/a>, <strong>Biophysical Journal<\/strong>, 118, 2489-2501. (<strong>*Corresponding Author<\/strong>)<\/li>\n\n\n\n<li>Simon Miller, You Lee Son, Yoshiki Aikawa, Eri Makino, Yoshiko Nagai, <strong><u>Ashutosh Srivastava<\/u><\/strong>, et al. (2020); <a href=\"https:\/\/www.nature.com\/articles\/s41589-020-0505-1\" target=\"_blank\" rel=\"noreferrer noopener\">Isoform-selective regulation of mammalian cryptochromes.<\/a> <strong>Nature Chemical Biology<\/strong>, 16, 676-685.<\/li>\n\n\n\n<li>Jennifer Fribourgh<sup>#<\/sup>, <strong><u>Ashutosh Srivastava<\/u><\/strong><sup>#<\/sup>, Colby Sandate<sup>#<\/sup> et al. (2020); <a href=\"https:\/\/elifesciences.org\/articles\/55275\" target=\"_blank\" rel=\"noreferrer noopener\">Dynamics at the serine loop underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing<\/a>; <strong>eLife<\/strong>; 9:e55275<strong> (<sup>#<\/sup>Equal Contribution)<\/strong><\/li>\n\n\n\n<li><strong><u>Ashutosh Srivastava<\/u><\/strong>, Sandhya P. Tiwari, Osamu Miyashita and Florence Tama (2020); <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0022283620301054\" target=\"_blank\" rel=\"noreferrer noopener\">Integrative\/Hybrid modeling approaches for studying biomolecules<\/a>, <strong>Journal of Molecular Biology<\/strong>, 432, 2846-2860.<\/li>\n\n\n\n<li>Aarthi Putarjunan, Jim Ruble, <strong><u>Ashutosh Srivastava<\/u><\/strong>, et al. (2019); <a href=\"https:\/\/www.nature.com\/articles\/s41477-019-0440-x\" target=\"_blank\" rel=\"noreferrer noopener\">Bipartite anchoring of SCREAM enforces stomatal initiation by coupling MAP Kinases to SPEECHLESS<\/a>, <strong>Nature Plants<\/strong>,5,&nbsp; 742\u2013754.<\/li>\n\n\n\n<li>Tsuyoshi Oshima, Yoshimi Niwa, Keiko Kuwata, <strong><u>Ashutosh Srivastava<\/u><\/strong>, et al.(2019); <a href=\"https:\/\/www.science.org\/doi\/full\/10.1126\/sciadv.aau9060\" target=\"_blank\" rel=\"noreferrer noopener\">Cell-based screen identifies a new potent and highly selective CK2 inhibitor for modulation of circadian rhythms and cancer cell growth<\/a>; <strong>Science Advances<\/strong>, 5, 1, eaau9060<\/li>\n\n\n\n<li><strong><u>Ashutosh Srivastava<\/u><\/strong>, Tetsuro Nagai, Arpita Srivastava, Osamu Miyashita, Florence Tama (2018); <a href=\"https:\/\/www.mdpi.com\/1422-0067\/19\/11\/3401\" target=\"_blank\" rel=\"noreferrer noopener\">Role of Computational Methods in Going beyond X-ray Crystallography to Explore Protein Structure and Dynamics<\/a>,&nbsp;<strong>International Journal of Molecular Sciences<\/strong>, 19(11):3401.<\/li>\n\n\n\n<li><strong><u>Ashutosh Srivastava<\/u><\/strong>, Tsuyoshi Hirota, Stephan Irle, Florence Tama (2018); <a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1002\/prot.25444\" target=\"_blank\" rel=\"noreferrer noopener\">Conformational dynamics of human Protein Kinase CK2\u03b1 and its effect on function and inhibition<\/a>. <strong>Proteins<\/strong>, 86, 344\u2013353.<\/li>\n\n\n\n<li><strong><u>Ashutosh Srivastava<\/u><\/strong>, Somdatta Sinha (2017); <a href=\"https:\/\/pubs.rsc.org\/en\/content\/articlehtml\/2017\/mb\/c6mb00646a\" target=\"_blank\" rel=\"noreferrer noopener\">Uncoupling of ammonia channel as a mechanism of allosteric inhibition in Anthranilate Synthase of <em>Serratia marcescens<\/em>: dynamic and graph theoretic analysis.<\/a> <strong>Molecular BioSystems<\/strong>, 13, 142-155.<\/li>\n\n\n\n<li><strong><u>Ashutosh Srivastava<\/u><\/strong>, Somdatta Sinha (2014); <a href=\"https:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0102856\" target=\"_blank\" rel=\"noreferrer noopener\">Thermostability of&nbsp;<em>In Vitro<\/em>&nbsp;Evolved&nbsp;<em>Bacillus subtilis<\/em>&nbsp;Lipase A: A Network and Dynamics Perspective<\/a>. <strong>PLoS ONE <\/strong>9(8): e102856.<\/li>\n<\/ul>\n<\/div>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-9653c711 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"694\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Karthik-Ashutosh-Sandhya-1024x694.jpg\" alt=\"\" class=\"wp-image-616 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Karthik-Ashutosh-Sandhya-1024x694.jpg 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Karthik-Ashutosh-Sandhya-300x203.jpg 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Karthik-Ashutosh-Sandhya-768x521.jpg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Karthik-Ashutosh-Sandhya.jpg 1049w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/doi.org\/10.1016\/j.bpj.2025.10.038\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.1016\/j.bpj.2025.10.038\">Comparing PAS domain-coupled intrinsic dynamics in bHLH-PAS domain transcription factor complexes<\/a>.<\/strong><\/p>\n\n\n\n<p><strong><strong>Karthik Sudarsanam, Ashutosh Srivastava<\/strong>, <\/strong>and Sandhya P. Tiwari (2026). <em><strong>Biophysical Journal<\/strong><\/em>, <em>125<\/em>(2), 629\u2013640. <a href=\"https:\/\/doi.org\/10.1016\/j.bpj.2025.10.038\">https:\/\/doi.org\/10.1016\/j.bpj.2025.10.038<\/a><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-75335181 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"1024\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-1024x1024.jpg\" alt=\"\" class=\"wp-image-614 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-1024x1024.jpg 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-300x300.jpg 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-150x150.jpg 150w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-768x768.jpg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh-1536x1536.jpg 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/02\/Yashasvi-Ashutosh.jpg 1653w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/prot.26841\"><\/a><a href=\"https:\/\/doi.org\/10.1002\/1873-3468.70264\">Unraveling circadian rhythms\u2014computational insights into molecular mechanisms<\/a>. <\/strong><\/p>\n\n\n\n<p><strong><strong><strong>Yashasvi Rao, Ashutosh Srivastava<\/strong> <\/strong><\/strong>(2026<a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/prot.26841\"><\/a>), <strong>FEBS Letters.<\/strong> <a href=\"https:\/\/doi.org\/10.1002\/1873-3468.70264\">https:\/\/doi.org\/10.1002\/1873-3468.70264<\/a>.<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-24868d5d alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"585\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_2-1024x585.jpg\" alt=\"\" class=\"wp-image-672 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_2-1024x585.jpg 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_2-300x171.jpg 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_2-768x438.jpg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_2-1536x877.jpg 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_2.jpg 1552w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/doi.org\/10.1016\/j.forsciint.2026.112825\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.1016\/j.forsciint.2026.112825\">Elucidating the mechanism of fulvic acid-mediated PCR inhibition and its mitigation through nanoparticle-assisted amplification<\/a><\/strong><\/p>\n\n\n\n<p>Vajpayee, K., <strong>Shriyansh Srivastava<\/strong>, Sharma, S., Gupta, S., <strong>Ashutosh Srivastava<\/strong>, Paida, V., Dash, H. R., Pappachan, A., Shukla, R. K., &amp; Sengupta, S. (2026). <em><strong>Forensic Science International<\/strong><\/em>, <em>380<\/em>, 112825. <a href=\"https:\/\/doi.org\/10.1016\/j.forsciint.2026.112825\">https:\/\/doi.org\/10.1016\/j.forsciint.2026.112825<\/a><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-24868d5d alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"394\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_3-1024x394.webp\" alt=\"\" class=\"wp-image-673 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_3-1024x394.webp 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_3-300x115.webp 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_3-768x295.webp 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_3-1536x591.webp 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2026_paper_3.webp 1770w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/doi.org\/10.1038\/s41598-026-35010-w\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.1038\/s41598-026-35010-w\">Mechanistic insights into melanin-induced PCR inhibition and its NanoPCR-based mitigation<\/a><\/strong><\/p>\n\n\n\n<p>Vajpayee, K., <strong>Shriyansh Srivastava<\/strong>, Sharma, S. <em>et al.<\/em>  <em><strong>Scientific Reports<\/strong><\/em> 16, 5467 (2026). <a href=\"https:\/\/doi.org\/10.1038\/s41598-026-35010-w\">https:\/\/doi.org\/10.1038\/s41598-026-35010-w<\/a><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-6811850e alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"796\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-1024x796.jpg\" alt=\"\" class=\"wp-image-518 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-1024x796.jpg 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-300x233.jpg 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-768x597.jpg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-1536x1194.jpg 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sriyansh_SVishnu_A_M-2048x1592.jpg 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/doi.org\/10.1002\/prot.26841\">REV-ERB\u03b2 Binding Pocket Dynamics With Implications for Rational Design of Small Molecule Modulators<\/a><\/strong><\/p>\n\n\n\n<p><strong>Shriyansh Srivastava, Vishnu A M, Rakesh Thakur and Ashutosh Srivastava<\/strong> (2025), <strong>Proteins: Structure, Function, and Bioinformatics<\/strong> 93, no. 10 (2025): 1790\u20131804, <a href=\"https:\/\/doi.org\/10.1002\/prot.26841.\">https:\/\/doi.org\/10.1002\/prot.26841.<\/a><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-ea005139 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile is-image-fill-element\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"678\" height=\"1024\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2025_paper-678x1024.webp\" alt=\"\" class=\"wp-image-685 size-full\" style=\"object-position:61% 36%\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2025_paper-678x1024.webp 678w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2025_paper-199x300.webp 199w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2025_paper-768x1160.webp 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2025_paper-1017x1536.webp 1017w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2025_paper-1356x2048.webp 1356w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2025_paper-scaled.webp 1695w\" sizes=\"(max-width: 678px) 100vw, 678px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/doi.org\/10.1007\/s11103-024-01548-4\">Structural insights into the recognition of RALF peptides by FERONIA receptor kinase during Brassicaceae pollination.<\/a><\/strong><\/p>\n\n\n\n<p>Bhalla, H.,<strong> Karthik Sudarsanam, Ashutosh Srivastava,<\/strong> Sankaranarayanan, S., <em><strong>Plant Molecular <\/strong><\/em><strong><em>Biol<\/em>ogy<\/strong> <strong>115<\/strong>, 17 (2025). <a href=\"https:\/\/doi.org\/10.1007\/s11103-024-01548-4\">https:\/\/doi.org\/10.1007\/s11103-024-01548-4<\/a><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-ea005139 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"579\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S-1024x579.webp\" alt=\"\" class=\"wp-image-519 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S-1024x579.webp 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S-300x169.webp 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S-768x434.webp 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S-1536x868.webp 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Shashank_SAshutosh_S.webp 2032w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/link.springer.com\/article\/10.1007\/s11103-024-01493-2\">Decoding the plant clock: a review of mathematical models for the circadian regulatory network<\/a>.<\/strong><\/p>\n\n\n\n<p><strong>Shashank Kumar Singh, Ashutosh Srivastava <\/strong>(2024);  <strong><em>Plant Mol Biol<\/em> , <\/strong>114, 93 (2024). <a href=\"https:\/\/doi.org\/10.1007\/s11103-024-01493-2\">https:\/\/doi.org\/10.1007\/s11103-024-01493-2<\/a><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-cdb75766 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"588\" height=\"545\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Dhara-Palash-Niyati-Shah-Vidya-Sundaram-Ashutosh-Srivastava.jpg\" alt=\"\" class=\"wp-image-520 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Dhara-Palash-Niyati-Shah-Vidya-Sundaram-Ashutosh-Srivastava.jpg 588w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Dhara-Palash-Niyati-Shah-Vidya-Sundaram-Ashutosh-Srivastava-300x278.jpg 300w\" sizes=\"(max-width: 588px) 100vw, 588px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/doi.org\/10.1016\/j.isci.2024.109286\">Influence of Protein Nativity on the Stability of Bovine Serum Albumin Coated Microbubbles<\/a>.<\/strong><\/p>\n\n\n\n<p>Dhara, Palash, Niyati Shah, <strong>Vidya Sundaram<\/strong>, <strong>Ashutosh Srivastava<\/strong>, Alexander A. Solovev, Yongfeng Mei, Dmitry A. Gorin, and Krishna Kanti Dey (2024);  <em><strong>iScience<\/strong><\/em>, 109286.<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-8262c6c7 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"913\" height=\"1024\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2022_paper-913x1024.jpg\" alt=\"\" class=\"wp-image-683 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2022_paper-913x1024.jpg 913w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2022_paper-268x300.jpg 268w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2022_paper-768x861.jpg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2022_paper-1370x1536.jpg 1370w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2022_paper-1827x2048.jpg 1827w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Karthik_2022_paper.jpg 1950w\" sizes=\"(max-width: 913px) 100vw, 913px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/doi.org\/10.1080\/07391102.2021.1925154\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.1080\/07391102.2021.1925154\">Mechanism of electron transfers mediated by cytochromes <em>c<\/em> and <em>b<\/em><sub>5<\/sub> in mitochondria and endoplasmic reticulum: classical and murburn perspectives.<\/a><\/strong><\/p>\n\n\n\n<p>Gideon, D. A., Nirusimhan, V., E, J. C., <strong>Karthik Sudarsha,<\/strong> &amp; Manoj, K. M. (2022). <em><strong>Journal of Biomolecular Structure and Dynamics<\/strong><\/em>, <em>40<\/em>(19), 9235\u20139252. <a href=\"https:\/\/doi.org\/10.1080\/07391102.2021.1925154\">https:\/\/doi.org\/10.1080\/07391102.2021.1925154<br><\/a><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-8262c6c7 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"570\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sayantoni-Chaudhuri-and-Ashutosh-Srivastava-1024x570.webp\" alt=\"\" class=\"wp-image-521 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sayantoni-Chaudhuri-and-Ashutosh-Srivastava-1024x570.webp 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sayantoni-Chaudhuri-and-Ashutosh-Srivastava-300x167.webp 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sayantoni-Chaudhuri-and-Ashutosh-Srivastava-768x427.webp 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sayantoni-Chaudhuri-and-Ashutosh-Srivastava-1536x855.webp 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Sayantoni-Chaudhuri-and-Ashutosh-Srivastava.webp 2018w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/link.springer.com\/article\/10.1007\/s12038-022-00285-4\">Network approach to understand biological systems: From single to multilayer networks<\/a>.<\/strong><\/p>\n\n\n\n<p><strong>Sayantoni Chaudhuri<\/strong> and <strong>Ashutosh Srivastava<\/strong> (2022);  <strong>Journal of Biosciences<\/strong>, 47, 4, 1-18<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-9165d09d alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"494\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Albert-M-Schulte-Dusan-Kolarski-Vidya-Sundaram-Ashutosh-Srivastava-1024x494.png\" alt=\"\" class=\"wp-image-522 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Albert-M-Schulte-Dusan-Kolarski-Vidya-Sundaram-Ashutosh-Srivastava-1024x494.png 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Albert-M-Schulte-Dusan-Kolarski-Vidya-Sundaram-Ashutosh-Srivastava-300x145.png 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Albert-M-Schulte-Dusan-Kolarski-Vidya-Sundaram-Ashutosh-Srivastava-768x370.png 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Albert-M-Schulte-Dusan-Kolarski-Vidya-Sundaram-Ashutosh-Srivastava-1536x740.png 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Albert-M-Schulte-Dusan-Kolarski-Vidya-Sundaram-Ashutosh-Srivastava-2048x987.png 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><a href=\"https:\/\/www.mdpi.com\/1422-0067\/23\/10\/5326\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Light-Control over Casein Kinase 1\u03b4 Activity with Photopharmacology: A Clear Case for Arylazopyrazole-Based Inhibitors.<\/strong><\/a><\/p>\n\n\n\n<p>Albert M Schulte, Du\u0161an Kolarski, <strong>Vidya Sundaram, Ashutosh Srivastava<\/strong>, Florence Tama, Ben L Feringa, Wiktor Szymanski (2022);  <strong>International Journal of Molecular Sciences<\/strong>, 23, 10, 5326<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-27bbcdec alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"661\" height=\"405\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/RP-Vivek-Ananth-Ajaya-Kumar-Sahoo-Ashutosh-Srivastava.gif\" alt=\"\" class=\"wp-image-523 size-full\"\/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/pubs.rsc.org\/en\/content\/articlehtml\/2022\/ra\/d1ra06702h\" target=\"_blank\" rel=\"noreferrer noopener\">Virtual screening of phytochemicals from Indian medicinal plants against the endonuclease domain of SFTS virus L polymerase<\/a>.<\/strong><\/p>\n\n\n\n<p>RP Vivek-Ananth, Ajaya Kumar Sahoo, <strong>Ashutosh Srivastava*<\/strong>, Areejit Samal* (2022);  <strong>RSC Advances<\/strong>, 12, 10, 6234-6247<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-ac9ddd7b alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1021\" height=\"1024\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2021_paper-1021x1024.jpg\" alt=\"\" class=\"wp-image-671 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2021_paper-1021x1024.jpg 1021w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2021_paper-300x300.jpg 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2021_paper-150x150.jpg 150w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2021_paper-768x770.jpg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2026\/03\/Shriyansh_2021_paper.jpg 1200w\" sizes=\"(max-width: 1021px) 100vw, 1021px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/doi.org\/10.1080\/14728222.2021.1924151\">Inhibition of MK2 kinase as a potential therapeutic target to control neuroinflammation in Alzheimer\u2019s disease<\/a><\/strong><\/p>\n\n\n\n<p><strong>Shriyansh Srivastava<\/strong>, Rajopadhye, R., Dey, M., &amp; Singh, R. K. (2021). <em><strong>Expert Opinion on Therapeutic Targets<\/strong><\/em>, <em>25<\/em>(4), 243\u2013247. <a href=\"https:\/\/doi.org\/10.1080\/14728222.2021.1924151\">https:\/\/doi.org\/10.1080\/14728222.2021.1924151<\/a><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-c67076fc alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"931\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-Ashutosh-Srivastava-1024x931.jpg\" alt=\"\" class=\"wp-image-524 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-Ashutosh-Srivastava-1024x931.jpg 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-Ashutosh-Srivastava-300x273.jpg 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-Ashutosh-Srivastava-768x698.jpg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-Ashutosh-Srivastava-1536x1397.jpg 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-Ashutosh-Srivastava-2048x1863.jpg 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/www.pnas.org\/doi\/10.1073\/pnas.2026191118\" target=\"_blank\" rel=\"noreferrer noopener\">Structural differences in the FAD-binding pockets and lid loops of mammalian CRY1 and CRY2 for isoform-selective regulation<\/a>.<\/strong><\/p>\n\n\n\n<p>Simon Miller<sup>#<\/sup><strong>, Ashutosh Srivastava<\/strong><sup>#<\/sup>, Yoshiko Nagai, Yoshiki Aikawa, Florence Tama, and Tsuyoshi Hirota (2021);  <strong>PNAS<\/strong>, 118, 26, e2026191118 <strong>(<sup>#<\/sup>Equal Contribution)<\/strong><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-3310574b alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"845\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Dusan-Kolarski-Carla-Miro-Vinyals-Akiko-Sugiyama-Kenichiro-Itami-Ashutosh-Srivastava-1024x845.webp\" alt=\"\" class=\"wp-image-525 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Dusan-Kolarski-Carla-Miro-Vinyals-Akiko-Sugiyama-Kenichiro-Itami-Ashutosh-Srivastava-1024x845.webp 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Dusan-Kolarski-Carla-Miro-Vinyals-Akiko-Sugiyama-Kenichiro-Itami-Ashutosh-Srivastava-300x247.webp 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Dusan-Kolarski-Carla-Miro-Vinyals-Akiko-Sugiyama-Kenichiro-Itami-Ashutosh-Srivastava-768x633.webp 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Dusan-Kolarski-Carla-Miro-Vinyals-Akiko-Sugiyama-Kenichiro-Itami-Ashutosh-Srivastava-1536x1267.webp 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Dusan-Kolarski-Carla-Miro-Vinyals-Akiko-Sugiyama-Kenichiro-Itami-Ashutosh-Srivastava.webp 1997w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/www.nature.com\/articles\/s41467-021-23301-x\" target=\"_blank\" rel=\"noreferrer noopener\">Reversible Modulation of Circadian Time with Chronophotopharmacology<\/a>.<\/strong><\/p>\n\n\n\n<p>Du\u0161an Kolarski, Carla Mir\u00f3 Vinyals, Akiko Sugiyama, Kenichiro Itami, <strong>Ashutosh Srivastava<\/strong>, Florence Tama, Wiktor Szymanski, Tsuyoshi Hirota, Ben L. Feringa (2021),  <strong>Nature Communications<\/strong>, 12, 3164.<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-d50e0138 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"894\" height=\"1024\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/12\/Ashutosh-Srivastava-Varun-Birari-Somdatta-Sinha-2020-894x1024.jpg\" alt=\"\" class=\"wp-image-547 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/12\/Ashutosh-Srivastava-Varun-Birari-Somdatta-Sinha-2020-894x1024.jpg 894w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/12\/Ashutosh-Srivastava-Varun-Birari-Somdatta-Sinha-2020-262x300.jpg 262w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/12\/Ashutosh-Srivastava-Varun-Birari-Somdatta-Sinha-2020-768x880.jpg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/12\/Ashutosh-Srivastava-Varun-Birari-Somdatta-Sinha-2020-1340x1536.jpg 1340w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/12\/Ashutosh-Srivastava-Varun-Birari-Somdatta-Sinha-2020-1787x2048.jpg 1787w\" sizes=\"(max-width: 894px) 100vw, 894px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0006349520303118\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Small conformational changes underlie evolution of resistance to NNRTI in HIV Reverse Transcriptase<\/strong><\/a>.<\/p>\n\n\n\n<p><strong>Ashutosh Srivastava*<\/strong>, Varun Birari, Somdatta Sinha*, (2020<a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0006349520303118\" target=\"_blank\" rel=\"noreferrer noopener\">)<\/a>, <strong>Biophysical Journal<\/strong>, 118, 2489-2501. (<strong>*Corresponding Author<\/strong>)<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-2a4a29c5 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"811\" height=\"1024\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-You-Lee-Son-Yoshiki-Aikawa-Eri-Makino-Yoshiko-Nagai-Ashutosh-Srivastava-811x1024.webp\" alt=\"\" class=\"wp-image-527 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-You-Lee-Son-Yoshiki-Aikawa-Eri-Makino-Yoshiko-Nagai-Ashutosh-Srivastava-811x1024.webp 811w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-You-Lee-Son-Yoshiki-Aikawa-Eri-Makino-Yoshiko-Nagai-Ashutosh-Srivastava-238x300.webp 238w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-You-Lee-Son-Yoshiki-Aikawa-Eri-Makino-Yoshiko-Nagai-Ashutosh-Srivastava-768x970.webp 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-You-Lee-Son-Yoshiki-Aikawa-Eri-Makino-Yoshiko-Nagai-Ashutosh-Srivastava-1216x1536.webp 1216w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Simon-Miller-You-Lee-Son-Yoshiki-Aikawa-Eri-Makino-Yoshiko-Nagai-Ashutosh-Srivastava.webp 1540w\" sizes=\"(max-width: 811px) 100vw, 811px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/www.nature.com\/articles\/s41589-020-0505-1\" target=\"_blank\" rel=\"noreferrer noopener\">Isoform-selective regulation of mammalian cryptochromes<\/a>.<\/strong><\/p>\n\n\n\n<p>Simon Miller, You Lee Son, Yoshiki Aikawa, Eri Makino, Yoshiko Nagai, <strong>Ashutosh Srivastava<\/strong>, et al. (2020)<a href=\"https:\/\/www.nature.com\/articles\/s41589-020-0505-1\" target=\"_blank\" rel=\"noreferrer noopener\">.<\/a> <strong>Nature Chemical Biology<\/strong>, 16, 676-685.<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-9ca4c6ba alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"617\" height=\"408\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Jennifer-Fribourgh-Ashutosh-Srivastava-Colby-Sandate-et-al.jpg\" alt=\"\" class=\"wp-image-528 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Jennifer-Fribourgh-Ashutosh-Srivastava-Colby-Sandate-et-al.jpg 617w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Jennifer-Fribourgh-Ashutosh-Srivastava-Colby-Sandate-et-al-300x198.jpg 300w\" sizes=\"(max-width: 617px) 100vw, 617px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/elifesciences.org\/articles\/55275\" target=\"_blank\" rel=\"noreferrer noopener\">Dynamics at the serine loop underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing<\/a>.<\/strong><\/p>\n\n\n\n<p>Jennifer Fribourgh<sup>#<\/sup>, <strong>Ashutosh Srivastava<\/strong><sup>#<\/sup>, Colby Sandate<sup>#<\/sup> et al. (2020); <strong>eLife<\/strong>; 9:e55275<strong> (<sup>#<\/sup>Equal Contribution)<\/strong><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-cd823da9 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"580\" height=\"629\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Sandhya-P.-Tiwari-Osamu-Miyashita.jpg\" alt=\"\" class=\"wp-image-529 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Sandhya-P.-Tiwari-Osamu-Miyashita.jpg 580w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Sandhya-P.-Tiwari-Osamu-Miyashita-277x300.jpg 277w\" sizes=\"(max-width: 580px) 100vw, 580px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0022283620301054\" target=\"_blank\" rel=\"noreferrer noopener\">Integrative\/Hybrid modeling approaches for studying biomolecules<\/a>.<\/strong><\/p>\n\n\n\n<p><strong>Ashutosh Srivastava<\/strong>, Sandhya P. Tiwari, Osamu Miyashita and Florence Tama (2020); <strong>Journal of Molecular Biology<\/strong>, 432, 2846-2860.<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-29e2ce6a alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"649\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Aarthi-Putarjunan-Jim-Ruble-Ashutosh-Srivastava-1024x649.webp\" alt=\"\" class=\"wp-image-530 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Aarthi-Putarjunan-Jim-Ruble-Ashutosh-Srivastava-1024x649.webp 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Aarthi-Putarjunan-Jim-Ruble-Ashutosh-Srivastava-300x190.webp 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Aarthi-Putarjunan-Jim-Ruble-Ashutosh-Srivastava-768x487.webp 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Aarthi-Putarjunan-Jim-Ruble-Ashutosh-Srivastava-1536x973.webp 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Aarthi-Putarjunan-Jim-Ruble-Ashutosh-Srivastava-2048x1298.webp 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/www.nature.com\/articles\/s41477-019-0440-x\" target=\"_blank\" rel=\"noreferrer noopener\">Bipartite anchoring of SCREAM enforces stomatal initiation by coupling MAP Kinases to SPEECHLESS<\/a>.<\/strong><\/p>\n\n\n\n<p>Aarthi Putarjunan, Jim Ruble, <strong>Ashutosh Srivastava<\/strong>, et al. (2019), <strong>Nature Plants<\/strong>,5,&nbsp; 742\u2013754.<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-e53068cd alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"812\" height=\"1024\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Tsuyoshi-Oshima-Yoshimi-Niwa-Keiko-Kuwata-Ashutosh-Srivastava-812x1024.jpeg\" alt=\"\" class=\"wp-image-531 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Tsuyoshi-Oshima-Yoshimi-Niwa-Keiko-Kuwata-Ashutosh-Srivastava-812x1024.jpeg 812w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Tsuyoshi-Oshima-Yoshimi-Niwa-Keiko-Kuwata-Ashutosh-Srivastava-238x300.jpeg 238w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Tsuyoshi-Oshima-Yoshimi-Niwa-Keiko-Kuwata-Ashutosh-Srivastava-768x968.jpeg 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Tsuyoshi-Oshima-Yoshimi-Niwa-Keiko-Kuwata-Ashutosh-Srivastava.jpeg 1050w\" sizes=\"(max-width: 812px) 100vw, 812px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/www.science.org\/doi\/full\/10.1126\/sciadv.aau9060\" target=\"_blank\" rel=\"noreferrer noopener\">Cell-based screen identifies a new potent and highly selective CK2 inhibitor for modulation of circadian rhythms and cancer cell growth<\/a>.<\/strong><\/p>\n\n\n\n<p>Tsuyoshi Oshima, Yoshimi Niwa, Keiko Kuwata, <strong>Ashutosh Srivastava<\/strong>, et al.(2019); <strong>Science Advances<\/strong>, 5, 1, eaau9060<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-c402ba5f alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"1010\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Tetsuro-Nagai-Arpita-Srivastava-1024x1010.png\" alt=\"\" class=\"wp-image-532 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Tetsuro-Nagai-Arpita-Srivastava-1024x1010.png 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Tetsuro-Nagai-Arpita-Srivastava-300x296.png 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Tetsuro-Nagai-Arpita-Srivastava-768x757.png 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Tetsuro-Nagai-Arpita-Srivastava-1536x1515.png 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Tetsuro-Nagai-Arpita-Srivastava-2048x2020.png 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/www.mdpi.com\/1422-0067\/19\/11\/3401\" target=\"_blank\" rel=\"noreferrer noopener\">Role of Computational Methods in Going beyond X-ray Crystallography to Explore Protein Structure and Dynamics<\/a>.<\/strong><\/p>\n\n\n\n<p><strong>Ashutosh Srivastava<\/strong>, Tetsuro Nagai, Arpita Srivastava, Osamu Miyashita, Florence Tama (2018);&nbsp;<strong>International Journal of Molecular Sciences<\/strong>, 19(11):3401.<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-928af739 alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"600\" height=\"610\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Tsuyoshi-Hirota-Stephan-Irle.jpg\" alt=\"\" class=\"wp-image-533 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Tsuyoshi-Hirota-Stephan-Irle.jpg 600w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Tsuyoshi-Hirota-Stephan-Irle-295x300.jpg 295w\" sizes=\"(max-width: 600px) 100vw, 600px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong><a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1002\/prot.25444\" target=\"_blank\" rel=\"noreferrer noopener\">Conformational dynamics of human Protein Kinase CK2\u03b1 and its effect on function and inhibition<\/a>. <\/strong><\/p>\n\n\n\n<p><strong>Ashutosh Srivastava<\/strong>, Tsuyoshi Hirota, Stephan Irle, Florence Tama (2018); <strong>Proteins<\/strong>, 86, 344\u2013353.<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-102fd76b alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"810\" height=\"487\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Somdatta-Sinha.gif\" alt=\"\" class=\"wp-image-534 size-full\"\/><\/figure><div class=\"wp-block-media-text__content\">\n<p><a href=\"https:\/\/pubs.rsc.org\/en\/content\/articlehtml\/2017\/mb\/c6mb00646a\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Uncoupling of ammonia channel as a mechanism of allosteric inhibition in Anthranilate Synthase of <em>Serratia marcescens<\/em>: dynamic and graph theoretic analysis.<\/strong><\/a><\/p>\n\n\n\n<p><strong>Ashutosh Srivastava<\/strong>, Somdatta Sinha (2017);  <strong>Molecular BioSystems<\/strong>, 13, 142-155.<\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n\n<div data-aos= \"fade\" data-aos-duration=\"400\" data-aos-delay=\"0\" data-aos-easing=\"ease\" data-aos-once=\"true\" class=\"wp-block-uagb-container .zoom-container {  display: block; \/* makes entire area clickable if it's a link *\/ transition: transform 0.25s ease, box-shadow ease; transform: scale(1); } .zoom-container:hover scale(1.05); adjust intensity here box-shadow: 0 10px 25px rgba(0,0,0,0.15); optional but it pop uagb-block-06e90a6c alignfull uagb-is-root-container\"><div class=\"uagb-container-inner-blocks-wrap\">\n<div class=\"wp-block-media-text is-stacked-on-mobile\"><figure class=\"wp-block-media-text__media\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"794\" src=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Somdatta-Sinha-1024x794.png\" alt=\"\" class=\"wp-image-535 size-full\" srcset=\"https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Somdatta-Sinha-1024x794.png 1024w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Somdatta-Sinha-300x233.png 300w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Somdatta-Sinha-768x596.png 768w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Somdatta-Sinha-1536x1192.png 1536w, https:\/\/research.iitgn.ac.in\/compbio\/wp-content\/uploads\/2025\/11\/Ashutosh-Srivastava-Somdatta-Sinha.png 1998w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/figure><div class=\"wp-block-media-text__content\">\n<p><strong> <a href=\"https:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0102856\" target=\"_blank\" rel=\"noreferrer noopener\">Thermostability of&nbsp;<em>In Vitro<\/em>&nbsp;Evolved&nbsp;<em>Bacillus subtilis<\/em>&nbsp;Lipase A: A Network and Dynamics Perspective<\/a>.<\/strong><\/p>\n\n\n\n<p><strong>Ashutosh Srivastava<\/strong>, Somdatta Sinha (2014); <strong>PLoS ONE <\/strong>9(8): e102856.<\/p>\n<\/div><\/div>\n<\/div><\/div>\n","protected":false},"excerpt":{"rendered":"<p>Comparing PAS domain-coupled intrinsic dynamics in bHLH-PAS domain transcription factor complexes. Karthik Sudarsanam, Ashutosh Srivastava, and Sandhya P. Tiwari (2026). Biophysical Journal, 125(2), 629\u2013640. https:\/\/doi.org\/10.1016\/j.bpj.2025.10.038 Unraveling circadian rhythms\u2014computational insights into molecular mechanisms. Yashasvi Rao, Ashutosh Srivastava (2026), FEBS Letters. https:\/\/doi.org\/10.1002\/1873-3468.70264. Elucidating the mechanism of fulvic acid-mediated PCR inhibition and its mitigation through nanoparticle-assisted amplification Vajpayee, [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_uag_custom_page_level_css":"","footnotes":""},"class_list":["post-501","page","type-page","status-publish","hentry"],"uagb_featured_image_src":{"full":false,"thumbnail":false,"medium":false,"medium_large":false,"large":false,"1536x1536":false,"2048x2048":false},"uagb_author_info":{"display_name":"Prithvinath Gollakota","author_link":"https:\/\/research.iitgn.ac.in\/compbio\/author\/prithvinath\/"},"uagb_comment_info":0,"uagb_excerpt":"Comparing PAS domain-coupled intrinsic dynamics in bHLH-PAS domain transcription factor complexes. Karthik Sudarsanam, Ashutosh Srivastava, and Sandhya P. Tiwari (2026). Biophysical Journal, 125(2), 629\u2013640. https:\/\/doi.org\/10.1016\/j.bpj.2025.10.038 Unraveling circadian rhythms\u2014computational insights into molecular mechanisms. Yashasvi Rao, Ashutosh Srivastava (2026), FEBS Letters. https:\/\/doi.org\/10.1002\/1873-3468.70264. Elucidating the mechanism of fulvic acid-mediated PCR inhibition and its mitigation through nanoparticle-assisted amplification Vajpayee,&hellip;","jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/research.iitgn.ac.in\/compbio\/wp-json\/wp\/v2\/pages\/501","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/research.iitgn.ac.in\/compbio\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/research.iitgn.ac.in\/compbio\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/research.iitgn.ac.in\/compbio\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/research.iitgn.ac.in\/compbio\/wp-json\/wp\/v2\/comments?post=501"}],"version-history":[{"count":40,"href":"https:\/\/research.iitgn.ac.in\/compbio\/wp-json\/wp\/v2\/pages\/501\/revisions"}],"predecessor-version":[{"id":687,"href":"https:\/\/research.iitgn.ac.in\/compbio\/wp-json\/wp\/v2\/pages\/501\/revisions\/687"}],"wp:attachment":[{"href":"https:\/\/research.iitgn.ac.in\/compbio\/wp-json\/wp\/v2\/media?parent=501"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}